Package: ADAPTS
Type: Package
Title: Automated Deconvolution Augmentation of Profiles for Tissue
        Specific Cells
Version: 1.0.22
Author: Samuel A Danziger
Maintainer: Samuel A Danziger <sam.danziger@gmail.com>
Copyright: Bristol-Myers Squibb
Description: Tools to construct (or add to) cell-type signature
        matrices using flow sorted or single cell samples and
        deconvolve bulk gene expression data. Useful for assessing the
        quality of single cell RNAseq experiments, estimating the
        accuracy of signature matrices, and determining cell-type
        spillover. Please cite: Danziger SA et al. (2019) ADAPTS:
        Automated Deconvolution Augmentation of Profiles for Tissue
        Specific cells <doi:10.1371/journal.pone.0224693>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Depends: R (>= 3.3.0)
biocViews:
Imports: missForest, e1071, ComICS, pheatmap, doParallel, utils,
        quantmod, preprocessCore, pcaMethods, foreach, nnls, ranger
Suggests: R.rsp, DeconRNASeq, WGCNA
VignetteBuilder: R.rsp
NeedsCompilation: no
Packaged: 2026-06-11 09:32:48 UTC; root
Config/pak/sysreqs: libssl-dev
Repository: https://sdanzige.r-universe.dev
Date/Publication: 2022-09-07 19:23:01 UTC
RemoteUrl: https://github.com/sdanzige/adapts
RemoteRef: HEAD
RemoteSha: 67507831cb8882e2057f1790384217375099d536